Wiki
synapseclient.wiki
¶
Wiki¶
A Wiki page requires a title, markdown and an owner object and can also include images.
Creating a Wiki¶
import synapseclient
from synapseclient import Wiki
## Initialize a Synapse object & authenticate
syn = synapseclient.Synapse()
syn.login()
entity = syn.get('syn123456')
content = """
# My Wiki Page
Here is a description of my **fantastic** project!
An attached image:
${image?fileName=logo.png&align=none}
"""
wiki = Wiki(title='My Wiki Page',
owner=entity,
markdown=content,
attachments=['/path/to/logo.png'])
wiki = syn.store(wiki)
Embedding images¶
Note that in the above example, we've attached a logo graphic and embedded it in the web page.
Figures that are more than just decoration can be stored as Synapse entities allowing versioning and provenance information to be recorded. This is a better choice for figures with data behind them.
Updating a Wiki¶
import synapseclient
## Initialize a Synapse object & authenticate
syn = synapseclient.Synapse()
syn.login()
entity = syn.get('syn123456')
wiki = syn.getWiki(entity)
wiki.markdown = """
# My Wiki Page
Here is a description of my **fantastic** project! Let's
*emphasize* the important stuff.
An embedded image that is also a Synapse entity:
${image?synapseId=syn1824434&align=None&scale=66}
Now we can track it's provenance and keep multiple versions.
"""
wiki = syn.store(wiki)
Classes¶
Wiki
¶
Bases: DictObject
Represents a wiki page in Synapse with content specified in markdown.
| PARAMETER | DESCRIPTION |
|---|---|
title
|
Title of the Wiki
|
owner
|
Parent Entity that the Wiki will belong to
|
markdown
|
Content of the Wiki (cannot be defined if markdownFile is defined)
|
markdownFile
|
Path to file which contains the Content of Wiki (cannot be defined if markdown is defined)
|
attachments
|
List of paths to files to attach
|
fileHandles
|
List of file handle IDs representing files to be attached
|
parentWikiId
|
(optional) For sub-pages, specify parent wiki page
|
Source code in synapseclient/wiki.py
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Functions¶
json
¶
json()
Returns the JSON representation of the Wiki object.
Source code in synapseclient/wiki.py
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getURI
¶
getURI()
For internal use.
Source code in synapseclient/wiki.py
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postURI
¶
postURI()
For internal use.
Source code in synapseclient/wiki.py
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putURI
¶
putURI()
For internal use.
Source code in synapseclient/wiki.py
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deleteURI
¶
deleteURI()
For internal use.
Source code in synapseclient/wiki.py
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update_markdown
¶
update_markdown(markdown=None, markdown_file=None)
Updates the wiki's markdown. Specify only one of markdown or markdown_file
| PARAMETER | DESCRIPTION |
|---|---|
markdown
|
text that will become the markdown
DEFAULT:
|
markdown_file
|
path to a file. Its contents will be the markdown
DEFAULT:
|
Source code in synapseclient/wiki.py
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WikiAttachment
¶
Bases: DictObject
Represents a wiki page attachment.
Source code in synapseclient/wiki.py
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Functions¶
synapseclient.models.wiki
¶
Script to work with Synapse wiki pages.
Classes¶
WikiOrderHint
dataclass
¶
Bases: WikiOrderHintSynchronousProtocol
A WikiOrderHint contains the order hint for the root wiki that corresponds to the given owner ID and type.
| ATTRIBUTE | DESCRIPTION |
|---|---|
owner_id |
The Synapse ID of the owner object (e.g., entity, evaluation, etc.). |
owner_object_type |
The type of the owner object. |
id_list |
The list of sub wiki ids that in the order that they should be placed relative to their siblings. |
etag |
The etag of this object. |
Source code in synapseclient/models/wiki.py
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Attributes¶
owner_id
class-attribute
instance-attribute
¶
The Synapse ID of the owner object (e.g., entity, evaluation, etc.).
owner_object_type
class-attribute
instance-attribute
¶
The type of the owner object.
id_list
class-attribute
instance-attribute
¶
The list of sub wiki ids that in the order that they should be placed relative to their siblings.
etag
class-attribute
instance-attribute
¶
The etag of this object.
Functions¶
store_async
async
¶
store_async(*, synapse_client: Optional[Synapse] = None) -> WikiOrderHint
Store the order hint of a wiki page tree.
| PARAMETER | DESCRIPTION |
|---|---|
synapse_client
|
Optionally provide a Synapse client. |
Returns: The updated WikiOrderHint object for the entity. Raises: ValueError: If owner_id or request is not provided.
Set the WikiOrderHint for a project
This example shows how to set a WikiOrderHint for existing wiki pages in a project. The WikiOrderHint is not set by default, so you need to set it explicitly.
from synapseclient import Synapse
from synapseclient.models import (
Project,
WikiOrderHint,
)
syn = Synapse()
syn.login()
project = await Project(name="My uniquely named project about Alzheimer's Disease").get_async()
wiki_order_hint = await WikiOrderHint(owner_id=project.id).get_async()
wiki_order_hint.id_list = [
root_wiki_page.id,
wiki_page_1.id,
wiki_page_3.id,
wiki_page_2.id,
wiki_page_4.id,
]
await wiki_order_hint.store_async()
print(wiki_order_hint)
Example: Update the WikiOrderHint for a project This example shows how to update a WikiOrderHint for existing wiki pages in a project.
wiki_order_hint.id_list = [
root_wiki_page.id,
wiki_page_1.id,
wiki_page_2.id,
wiki_page_3.id,
wiki_page_4.id,
]
await wiki_order_hint.store_async()
print(wiki_order_hint)
Source code in synapseclient/models/wiki.py
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get_async
async
¶
get_async(*, synapse_client: Optional[Synapse] = None) -> WikiOrderHint
Get the order hint of a wiki page tree.
| PARAMETER | DESCRIPTION |
|---|---|
synapse_client
|
Optionally provide a Synapse client. |
Returns: A WikiOrderHint object for the entity. Raises: ValueError: If owner_id is not provided.
Get the WikiOrderHint for a project
This example shows how to get a WikiOrderHint for existing wiki pages in a project.
from synapseclient import Synapse
from synapseclient.models import (
Project,
WikiOrderHint,
)
syn = Synapse()
syn.login()
project = await Project(name="My uniquely named project about Alzheimer's Disease").get_async()
wiki_order_hint = await WikiOrderHint(owner_id=project.id).get_async()
print(wiki_order_hint)
Source code in synapseclient/models/wiki.py
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WikiHistorySnapshot
dataclass
¶
Bases: WikiHistorySnapshotSynchronousProtocol
A WikiHistorySnapshot contains basic information about an update to a WikiPage.
| ATTRIBUTE | DESCRIPTION |
|---|---|
version |
The version number of the wiki page. |
modified_on |
The timestamp when this version was created. modified_by: The ID of the user that created this version. |
Source code in synapseclient/models/wiki.py
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Attributes¶
version
class-attribute
instance-attribute
¶
The version number of the wiki page.
modified_on
class-attribute
instance-attribute
¶
The timestamp when this version was created.
modified_by
class-attribute
instance-attribute
¶
The ID of the user that created this version.
Functions¶
get_async
async
classmethod
¶
get_async(owner_id: str = None, id: str = None, *, offset: int = 0, limit: int = 20, synapse_client: Optional[Synapse] = None) -> AsyncGenerator[WikiHistorySnapshot, None]
Get the history of a wiki page as a list of WikiHistorySnapshot objects.
| PARAMETER | DESCRIPTION |
|---|---|
owner_id
|
The Synapse ID of the owner entity.
TYPE:
|
id
|
The ID of the wiki page.
TYPE:
|
offset
|
The index of the pagination offset.
TYPE:
|
limit
|
Limits the size of the page returned.
TYPE:
|
synapse_client
|
Optionally provide a Synapse client. |
Yields: Individual WikiHistorySnapshot objects from each page of the response.
Get the history of a wiki page
async def main():
async for item in WikiHistorySnapshot.get_async(owner_id=project.id, id=wiki_page.id):
print(f"History: {item}")
asyncio.run(main())
Source code in synapseclient/models/wiki.py
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get
classmethod
¶
get(owner_id: str = None, id: str = None, *, offset: int = 0, limit: int = 20, synapse_client: Optional[Synapse] = None) -> Generator[WikiHistorySnapshot, None, None]
Get the history of a wiki page as a list of WikiHistorySnapshot objects.
| PARAMETER | DESCRIPTION |
|---|---|
owner_id
|
The Synapse ID of the owner entity.
TYPE:
|
id
|
The ID of the wiki page.
TYPE:
|
offset
|
The index of the pagination offset.
TYPE:
|
limit
|
Limits the size of the page returned.
TYPE:
|
synapse_client
|
Optionally provide a Synapse client. |
Yields: Individual WikiHistorySnapshot objects from each page of the response.
Get the history of a wiki page
for history in WikiHistorySnapshot.get(owner_id=project.id, id=wiki_page.id):
print(f"History: {history}")
Source code in synapseclient/models/wiki.py
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WikiHeader
dataclass
¶
Bases: WikiHeaderSynchronousProtocol
A WikiHeader contains basic metadata about a WikiPage.
| ATTRIBUTE | DESCRIPTION |
|---|---|
id |
The unique identifier for this wiki page. |
title |
The title of this page. |
parent_id |
When set, the WikiPage is a sub-page of the indicated parent WikiPage. |
Source code in synapseclient/models/wiki.py
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Attributes¶
id
class-attribute
instance-attribute
¶
The unique identifier for this wiki page.
parent_id
class-attribute
instance-attribute
¶
When set, the WikiPage is a sub-page of the indicated parent WikiPage.
Functions¶
get_async
async
classmethod
¶
get_async(owner_id: str = None, *, offset: int = 0, limit: int = 20, synapse_client: Optional[Synapse] = None) -> AsyncGenerator[WikiHeader, None]
Get the header tree (hierarchy) of wiki pages for an entity.
| PARAMETER | DESCRIPTION |
|---|---|
owner_id
|
The Synapse ID of the owner entity.
TYPE:
|
offset
|
The index of the pagination offset.
TYPE:
|
limit
|
Limits the size of the page returned.
TYPE:
|
synapse_client
|
Optionally provide a Synapse client. |
Yields: Individual WikiHeader objects for the entity.
Get the header tree (hierarchy) of wiki pages for an entity
async def main():
async for item in WikiHeader.get_async(owner_id=project.id):
print(f"Header: {item}")
asyncio.run(main())
Source code in synapseclient/models/wiki.py
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get
classmethod
¶
get(owner_id: str, *, offset: int = 0, limit: int = 20, synapse_client: Optional[Synapse] = None) -> Generator[WikiHeader, None, None]
Get the header tree (hierarchy) of wiki pages for an entity.
| PARAMETER | DESCRIPTION |
|---|---|
owner_id
|
The ID of the owner entity.
TYPE:
|
offset
|
The index of the pagination offset.
TYPE:
|
limit
|
Limits the size of the page returned.
TYPE:
|
synapse_client
|
Optionally provide a Synapse client. |
Yields: Individual WikiHeader objects for the entity.
Get the header tree (hierarchy) of wiki pages for an entity
for header in WikiHeader.get(owner_id=project.id):
print(f"Header: {header}")
Source code in synapseclient/models/wiki.py
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WikiPage
dataclass
¶
Bases: WikiPageSynchronousProtocol
Represents a Wiki Page.
| ATTRIBUTE | DESCRIPTION |
|---|---|
id |
The unique identifier for this wiki page. |
etag |
The etag of this object. Synapse employs an Optimistic Concurrency Control (OCC) scheme to handle concurrent updates. Since the E-Tag changes every time an entity is updated it is used to detect when a client's current representation of an entity is out-of-date. |
title |
The title of this page. |
parent_id |
When set, the WikiPage is a sub-page of the indicated parent WikiPage. |
markdown |
The markdown content of the wiki page. |
attachments |
A list of file attachments associated with the wiki page. |
owner_id |
The Synapse ID of the owning object (e.g., entity, evaluation, etc.). |
created_on |
The timestamp when this page was created. |
created_by |
The ID of the user that created this page. |
modified_on |
The timestamp when this page was last modified. |
modified_by |
The ID of the user that last modified this page. |
wiki_version |
The version number of this wiki page. |
markdown_file_handle_id |
The ID of the file handle containing the markdown content. |
attachment_file_handle_ids |
The list of attachment file handle ids of this page. |
Source code in synapseclient/models/wiki.py
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Attributes¶
id
class-attribute
instance-attribute
¶
The unique identifier for this wiki page.
etag
class-attribute
instance-attribute
¶
The etag of this object. Synapse employs an Optimistic Concurrency Control (OCC) scheme to handle concurrent updates. Since the E-Tag changes every time an entity is updated it is used to detect when a client's current representation of an entity is out-of-date.
parent_id
class-attribute
instance-attribute
¶
When set, the WikiPage is a sub-page of the indicated parent WikiPage.
markdown
class-attribute
instance-attribute
¶
The markdown content of this page.
attachments
class-attribute
instance-attribute
¶
A list of file paths sassociated with this page.
owner_id
class-attribute
instance-attribute
¶
The Synapse ID of the owning object (e.g., entity, evaluation, etc.).
created_on
class-attribute
instance-attribute
¶
The timestamp when this page was created.
created_by
class-attribute
instance-attribute
¶
The ID of the user that created this page.
modified_on
class-attribute
instance-attribute
¶
The timestamp when this page was last modified.
modified_by
class-attribute
instance-attribute
¶
The ID of the user that last modified this page.
wiki_version
class-attribute
instance-attribute
¶
The version number of this wiki page.
markdown_file_handle_id
class-attribute
instance-attribute
¶
The ID of the file handle containing the markdown content.
attachment_file_handle_ids
class-attribute
instance-attribute
¶
The list of attachment file handle ids of this page.
Functions¶
unzip_gzipped_file
staticmethod
¶
Unzip the gzipped file and return the file path to the unzipped file. If the file is a markdown file, the content will be printed.
| PARAMETER | DESCRIPTION |
|---|---|
file_path
|
The path to the gzipped file.
TYPE:
|
Returns: The file path to the unzipped file.
Unzip a gzipped file
file_path = "path/to/file.md.gz"
unzipped_file_path = WikiPage.unzip_gzipped_file(file_path)
Source code in synapseclient/models/wiki.py
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reformat_attachment_file_name
staticmethod
¶
Reformat the attachment file name to be a valid attachment path.
| PARAMETER | DESCRIPTION |
|---|---|
attachment_file_name
|
The name of the attachment file.
TYPE:
|
Returns: The reformatted attachment file name.
Reformat the attachment file name
attachment_file_name = "file.txt"
attachment_file_name_reformatted = WikiPage.reformat_attachment_file_name(attachment_file_name)
print(f"Reformatted attachment file name: {attachment_file_name_reformatted}")
Source code in synapseclient/models/wiki.py
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store_async
async
¶
Store the wiki page. If there is no wiki page, a new wiki page will be created. If the wiki page already exists, it will be updated. Subwiki pages are created by passing in a parent_id. If a parent_id is provided, the wiki page will be created as a subwiki page.
| PARAMETER | DESCRIPTION |
|---|---|
synapse_client
|
If not passed in and caching was not disabled by
|
| RETURNS | DESCRIPTION |
|---|---|
WikiPage
|
The created/updated wiki page. |
| RAISES | DESCRIPTION |
|---|---|
ValueError
|
If owner_id is not provided or if required fields are missing. |
Store a wiki page
This example shows how to store a wiki page.
from synapseclient import Synapse
from synapseclient.models import (
Project,
WikiPage,
)
syn = Synapse()
syn.login()
project = await Project(name="My uniquely named project about Alzheimer's Disease").get_async()
wiki_page = await WikiPage(owner_id=project.id, title="My wiki page").store_async()
print(wiki_page)
Source code in synapseclient/models/wiki.py
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restore_async
async
¶
Restore a specific version of a wiki page.
| PARAMETER | DESCRIPTION |
|---|---|
synapse_client
|
If not passed in and caching was not disabled by
|
| RETURNS | DESCRIPTION |
|---|---|
WikiPage
|
The restored wiki page. |
Restore a specific version of a wiki page
This example shows how to restore a specific version of a wiki page.
wiki_page_restored = await WikiPage(owner_id=project.id, id=wiki_page.id, wiki_version="0").restore_async()
print(wiki_page_restored)
Source code in synapseclient/models/wiki.py
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get_async
async
¶
Get a wiki page from Synapse.
| PARAMETER | DESCRIPTION |
|---|---|
synapse_client
|
If not passed in and caching was not disabled by
|
| RETURNS | DESCRIPTION |
|---|---|
WikiPage
|
The wiki page. |
| RAISES | DESCRIPTION |
|---|---|
ValueError
|
If owner_id is not provided. |
Get a wiki page from Synapse
This example shows how to get a wiki page from Synapse.
wiki_page = await WikiPage(owner_id=project.id, id=wiki_page.id).get_async()
print(wiki_page)
Source code in synapseclient/models/wiki.py
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delete_async
async
¶
Delete this wiki page.
| PARAMETER | DESCRIPTION |
|---|---|
synapse_client
|
Optionally provide a Synapse client. |
Raises: ValueError: If required fields are missing.
Delete a wiki page
This example shows how to delete a wiki page.
wiki_page = await WikiPage(owner_id=project.id, id=wiki_page.id).delete_async()
print(f"Wiki page {wiki_page.title} deleted successfully.")
Source code in synapseclient/models/wiki.py
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get_attachment_handles_async
async
¶
Get the file handles of all attachments on this wiki page.
| PARAMETER | DESCRIPTION |
|---|---|
synapse_client
|
Optionally provide a Synapse client. |
Returns: The list of FileHandles for all file attachments of this WikiPage. Raises: ValueError: If owner_id or id is not provided.
Get the file handles of all attachments on a wiki page
This example shows how to get the file handles of all attachments on a wiki page.
attachment_handles = await WikiPage(owner_id=project.id, id=wiki_page.id).get_attachment_handles_async()
print(f"Attachment handles: {attachment_handles['list']}")
Source code in synapseclient/models/wiki.py
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get_attachment_async
async
¶
get_attachment_async(*, file_name: str, download_file: bool = True, download_location: Optional[str] = None, synapse_client: Optional[Synapse] = None) -> Union[str, None]
Download the wiki page attachment to a local file or return the URL.
| PARAMETER | DESCRIPTION |
|---|---|
file_name
|
The name of the file to get. The file name can be in either non-gzipped or gzipped format.
TYPE:
|
download_file
|
Whether associated files should be downloaded. Default is True.
TYPE:
|
download_location
|
The directory to download the file to. Required if download_file is True. |
synapse_client
|
Optionally provide a Synapse client. |
Returns: If download_file is True, the attachment file will be downloaded to the download_location. Otherwise, the URL will be returned. Raises: ValueError: If owner_id or id is not provided.
Get the attachment URL for a wiki page
This example shows how to get the attachment file or URL for a wiki page.
attachment_file_or_url = await WikiPage(owner_id=project.id, id=wiki_page.id).get_attachment_async(file_name="attachment.txt", download_file=False)
print(f"Attachment URL: {attachment_file_or_url}")
Example: Download the attachment file for a wiki page This example shows how to download the attachment file for a wiki page.
attachment_file_path = await WikiPage(owner_id=project.id, id=wiki_page.id).get_attachment_async(file_name="attachment.txt", download_file=True, download_location="~/temp")
print(f"Attachment file path: {attachment_file_path}")
Source code in synapseclient/models/wiki.py
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get_attachment_preview_async
async
¶
get_attachment_preview_async(file_name: str, *, download_file: bool = True, download_location: Optional[str] = None, synapse_client: Optional[Synapse] = None) -> Union[str, None]
Download the wiki page attachment preview to a local file or return the URL.
| PARAMETER | DESCRIPTION |
|---|---|
file_name
|
The name of the file to get. The file name can be in either non-gzipped or gzipped format.
TYPE:
|
download_file
|
Whether associated files should be downloaded. Default is True.
TYPE:
|
download_location
|
The directory to download the file to. Required if download_file is True. |
synapse_client
|
Optionally provide a Synapse client. |
Returns: If download_file is True, the attachment preview file will be downloaded to the download_location. Otherwise, the URL will be returned. Raises: ValueError: If owner_id or id is not provided.
Get the attachment preview URL for a wiki page
This example shows how to get the attachment preview URL for a wiki page. Instead of using the file_name from the attachmenthandle response when isPreview=True, you should use the original file name in the get_attachment_preview request. The downloaded file will still be named according to the file_name provided in the response when isPreview=True.
attachment_preview_url = await WikiPage(owner_id=project.id, id=wiki_page.id).get_attachment_preview_async(file_name="attachment.txt.gz", download_file=False)
print(f"Attachment preview URL: {attachment_preview_url}")
Example: Download the attachment preview file for a wiki page This example shows how to download the attachment preview file for a wiki page.
attachment_preview_file_path = WikiPage(owner_id=project.id, id=wiki_page.id).get_attachment_preview(file_name="attachment.txt.gz", download_file=True, download_location="~/temp")
print(f"Attachment preview file path: {attachment_preview_file_path}")
Source code in synapseclient/models/wiki.py
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get_markdown_file_async
async
¶
get_markdown_file_async(*, download_file: bool = True, download_location: Optional[str] = None, synapse_client: Optional[Synapse] = None) -> Union[str, None]
Get the markdown URL of this wiki page. --> modify this to print the markdown file
| PARAMETER | DESCRIPTION |
|---|---|
download_file
|
Whether associated files should be downloaded. Default is True.
TYPE:
|
download_location
|
The directory to download the file to. Required if download_file is True. |
synapse_client
|
Optionally provide a Synapse client. |
Returns: If download_file is True, the markdown file will be downloaded to the download_location. Otherwise, the URL will be returned. Raises: ValueError: If owner_id or id is not provided.
Get the markdown URL for a wiki page
This example shows how to get the markdown URL for a wiki page.
markdown_url = await WikiPage(owner_id=project.id, id=wiki_page.id).get_markdown_file_async(download_file=False)
print(f"Markdown URL: {markdown_url}")
Example: Download the markdown file for a wiki page This example shows how to download the markdown file for a wiki page.
markdown_file_path = await WikiPage(owner_id=project.id, id=wiki_page.id).get_markdown_file_async(download_file=True, download_location="~/temp")
print(f"Markdown file path: {markdown_file_path}")
Source code in synapseclient/models/wiki.py
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